Scaffold Ga0157203_1001182

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1001182
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6549
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029440	Metagenome	188	N
F072344	Metagenome	121	N
F084222	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100118211	F084222	AGGA	MSKELYLSRLALEIEKHEERGNVRKAQELHNYFLKVANIRDLDPEAFADDYREEQDLMPKLNEEYYGEYQENPDEDIVDDSLGSDMYDHDVNEFKKDTSSNAMNLINSLREELQHNDLALKILDILEEELD*
Ga0157203_10011825	F072344	N/A	MENKKTQIKYNYDFEESFDFRAHSFFNLLCDLEEEHVKRYFNVLQLYPRSDIIVGVKKKLYLLIGFLSGDSCDVLPVSFSSDEVSVIKLSLELYSNLLCGKFEILSKVFEGLRVSLNFESIISSLCENRDLFTNLVDKNSPLNISSNLIYYKGKWAWDMLGVLRGSEFEKIGSIPLIKIEEVDDSRRIRY*
Ga0157203_10011827	F029440	GGA	MYDLAVENNKFICVPPRQLKKKDIDWKMRPICDRINASDYCWTVFCCQGHLSGIQKGSLPYLVLLCVNEKRPYILNQLYSAFEVDEEYDLNLPLCGPRSNMMLISLGSKDQHFTYISIHFNAQGKNDQDYCVKIMDRFSRTI*