Scaffold Ga0157203_1001069

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1001069
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7020
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000808	Metagenome / Metatranscriptome	882	Y
F002935	Metagenome	519	Y
F036238	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10010691	F036238	GGCGG	MGDRANFGFKQSNGDTIILYGHWAGHRMLENLASAVDKARPRWSDDGYATRIAVSQLVADEWASETGWGLYVNAIMDNEHKIPVVDWQSRTFSLHEEAPWSESTDYQVRGMVTEPLFTMSLDSFINKYSKVSL*
Ga0157203_100106915	F000808	AGG	MEYNYSLTTSYDGVLVYTLRVSDMLEAVEAWNKCVDFGGAYEYATYNLSDPMGKMYTKTFYRSGMVVVK*
Ga0157203_10010694	F000311	AGG	MMYFELTAPDRLSLEMAYWDAQIMGLDPEYMPPLTFNIGTGSIEKVSRIRDKYNLKESYWSEHEPTEIYNRR*
Ga0157203_10010695	F002935	AGGA	MDRYESRTKGYEGKLVDGKKLAEIANGIYNLQYSSDFSECTVDSLLLVELEEKNVFGDPKYALICSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKSCMTNTVADIADYIRIFGDRLDNNCALWQSKMSAHPVTMGL*