Scaffold Ga0157203_1001048

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1001048
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7086
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028509	Metagenome / Metatranscriptome	191	Y
F051122	Metagenome / Metatranscriptome	144	N
F058141	Metagenome / Metatranscriptome	135	N
F060902	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100104811	F028509	AGTAGG	MEDKIKVSIVIQSMLTDAMVEVHHQELMEEGQERLRFVKYLILYYPDTTQKILVDFVYEQFKKFDNK*
Ga0157203_10010487	F060902	AGGA	MVDPKLTQQAIDKLVNSKECMDSIRGLKCYDYEARFGAFIRVKCGIILLSAIDWDKVAQVMELAI*
Ga0157203_10010488	F051122	N/A	MTNQEYKLQLSALKSTLEIVLIEAEKKGKEISMAYECGMYIGTIKGIITHLEELTQDNG*
Ga0157203_10010489	F058141	N/A	MTILTHTNNMKIRIENIECRFAQNQYEFVKWYPNKYFGTKAQLMAEGYELIASQDDDFSLVKHNHHIHGSCFLNPESCYTIATIVYDKNERCTEIQSVGSRLLDLTKKERNNFFEVYQYADKQIKKENKNKDND*