Scaffold Ga0157203_1000892

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1000892
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7957
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001780	Metagenome / Metatranscriptome	635	Y
F043355	Metagenome / Metatranscriptome	156	N
F053132	Metagenome / Metatranscriptome	141	N
F068577	Metagenome / Metatranscriptome	124	N
F093501	Metagenome / Metatranscriptome	106	N
F097320	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10008921	F001780	GGAG	MAKLNDMTAPAKDSKTFDDWFFKQPKKAQDKMRENGVLPYREMVPSKHVFDIDPNHPAWAHIDTPSVRTEVDSFISRDHVGVMLKAFIDAIAYSNNFEFRRHVELVRWALSLPGCLDSRTIGKMHGISHFTMRYRARKIMRLVNSDACGLFPHVNVRRDKHRKTPKVDTPHRQEVS*
Ga0157203_100089212	F097320	N/A	MTSQDRLAATLRRLQNEARSLSAYQTTFVTQHDIHRVSIDADRLLSVLAITDATHIDDPADLVELRERLNIVRADLASLLVSVQNLHEKAEDMDKTLNDAENLVDNPDEVL*
Ga0157203_10008924	F068577	N/A	MRQRKLDPLLLRVMQAIHQTAEKPAKGFRTIDEWAAKWKVQRSSARMMLLKGVKLGLVEKRTYLRVIRKDAKPYPTAHFGEKTRPRKT*
Ga0157203_10008926	F053132	N/A	MATPTDDELEEMSRCWGVSVDRLRFLATCPHYDSKPHIRVDDYKDPTDRHIAKAIREAIRGSWLPSDAAKIGKVTLKTIEAFVCRHGIIWPPGCRRRLEWGRGTTHTHRLNEEHSNLLAKGRLTMAQAAAKGVEDGLTATETAERFGFSAPGMYNAAVRQGLRFRSHKEKYGTRKGKPKTPSV*
Ga0157203_10008928	F093501	N/A	MRRIIKAPQTIVLLSGYARSGKDTFAEGMTRCSVDIKRIAFADALKDAANDFAYQLGLTANFFDETFKKEHRDTLVAMGRFARSMHKDVFIFNLTEASKKERGHVVVPDTRYINEVVVTKQLMGEVRGWRVIHLHIETEGVGPANEEEAASIREMLEGTIPDQTYVFKPNTAVTIREVGASVAKHLQL*
Ga0157203_10008929	F043355	N/A	MENQNDRPPLTTIAATGKYVLKMSLPKEDKVKVYDDGVSARLFFKTAEGLCFSKSYGTKYGKSLAMLVGKISGKFVSEPKATLSVPDFLDYLRPATNVYFEVEVEVTPDGEWQGKPQFKYKMNFPKGKGVAASTIPTPTDW*