Scaffold Ga0157203_1000874

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1000874
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8059
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F009462	Metagenome / Metatranscriptome	317	Y
F024559	Metagenome / Metatranscriptome	205	Y
F026214	Metagenome / Metatranscriptome	198	Y
F073563	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100087410	F024559	GGAGG	MISALLKLIVGITLITAVAIFGPLAGLWSLNTLFPLLNIPYTFESWAAFFLLFGGLTGLRIGFKK*
Ga0157203_100087418	F073563	GAGG	MNPKYLYTIRWTQPYATYKMRPYLRHLRDEYEVTIEAKLARGEFDDAKKVIEKVMML*
Ga0157203_10008742	F026214	GAGG	MAIKNYKDYAYFENRPDVVKVFEDLEAYHNWCRIELRDFNPAELYKKDSQNYGAYMASKRPRKPYLGNKPRWDNNGRRNEQNFSR*
Ga0157203_100087420	F002977	GAGG	MNPQIPAEGIMKTNDWGNSKVYRVACECGDESHNHNVWVEAEDTGIVVTIYTTGKTNFWSKTRWYHIWTLLTKGYIDTESSVHLTKQQALNYASVLQLAIEDVEEFRKQNVKN*
Ga0157203_10008747	F009462	AGGAG	MELHESVKDTYKEMVIKEHDGFRLTLKKHEVLMPKGLFSIDMVQESLKDGQVIDSQVYNFFMTKEECQALAYGLTS*