Scaffold Ga0157203_1000482

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1000482
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12243
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002391	Metagenome / Metatranscriptome	564	Y
F012345	Metagenome	281	Y
F028780	Metagenome / Metatranscriptome	190	N
F040591	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10004822	F002391	N/A	MGTNLMGELVADMGTYIANNTTEVTRTIEAIVVLQDTVFTSIKVAGTDVKSTYIAAPGTAVKAGAIITPINNLQFSGVQLASGSVALVLG*
Ga0157203_100048225	F012345	N/A	MRFKLTYHIGLAVVQEWIFTSKSLAYWKKMDLIETGRFNDGRFKVTPV*
Ga0157203_10004826	F040591	N/A	MKIKDEYKGQTIVKNTTLGNMRLVVDNIDVSRYRHYVSIGFGYLFEEENVSTTAPEQCIRYEGIEADEQTEAPAATPKPKRKRQTNAKTNTKRSQG*
Ga0157203_10004827	F028780	AGGA	MKATLDRYISSHYEELHRYTRYFCSKYNPHLTIDTVISNAYLHCIEINDNTEDVGKVKSYILNSIKRQVIWKNVDSYKHEKIFANEMAVPDRYDDGEDLSYKIAIEQQYQGWKSSVDIYRDGLTDNVKIAVAKAYFDKGLTTARSMAEYFNIPVTSAHYLIADIKNTLKTIHHENKR*