Scaffold Ga0157203

Basic Information
Taxon OID	3300012663 Open in IMG/M
Scaffold ID	Ga0157203_1000163 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012663 Open in IMG/M

Scaffold ID

Ga0157203_1000163 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Indian River, Ontario, Canada - S50

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23592
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (72.55%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

23592

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (72.55%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Warsaw, Ontario
Coordinates	Lat. (^o)	44.42735	Long. (^o)	-78.1359	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Warsaw, Ontario

Coordinates

Lat. (^o)

44.42735

Long. (^o)

-78.1359

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F003265	Metagenome / Metatranscriptome	496	Y
F009948	Metagenome / Metatranscriptome	310	Y
F011580	Metagenome	289	Y
F072096	Metagenome	121	Y
F087091	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100016314	F087091	AGGAG	MNFLDSYPTEFYISDVGYLVFKQDCFECGRETQFLITPEQTKILINLLPEMVKQQTERWTGIQSPDIG*
Ga0157203_100016325	F000166	N/A	MANIPSQQEAEIFAKSVKKYQLLLSLCDWRIERGSKPAKQAMASVEFNQGARLATYRLGDFGAEKITADSLDKTALHELLHIFLHDLMSVAQDPKSSQEEIEMQEHRVINLLENLISKDSNGFI*
Ga0157203_100016330	F003265	N/A	VKWLVLLLIGFVFWASAKSPCIVLDFYKLSWIGEPTLRHIELSRWLTTNGDNCSSDDLAGIWNNLSAWAGVADSAELRAKVLYYYARAREREKK*
Ga0157203_100016345	F009948	AGG	MSTFQPDPNQVSIGVASLGTTQIFTVSNSSVQSTAFGASTTMIRICCSLGHSHFQIGTNPTASVTTSPMMPNNFTEIIRVTPGQKIAVIKDSTVAASTFSVTELI*
Ga0157203_10001635	F072096	GAG	MTNQDIQTLAENALHEACRHIQDALDVQTGDTAGLYFTGDREEIILDILTRYIDTELMLKDISNATKD*
Ga0157203_10001637	F011580	GGA	MTQSQALTKALILALIAPDDQKAEQASNLAEQIAFGLTDEQVEQCKLNALNMLESV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157203_1000163

Overview

Ecosystem & Geography

Associated Families

Sequences