Scaffold Ga0157203

Basic Information
Taxon OID	3300012663 Open in IMG/M
Scaffold ID	Ga0157203_1000144 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012663 Open in IMG/M

Scaffold ID

Ga0157203_1000144 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Indian River, Ontario, Canada - S50

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25161
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (52.63%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

25161

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (52.63%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Warsaw, Ontario
Coordinates	Lat. (^o)	44.42735	Long. (^o)	-78.1359	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Warsaw, Ontario

Coordinates

Lat. (^o)

44.42735

Long. (^o)

-78.1359

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006506	Metagenome / Metatranscriptome	371	Y
F010245	Metagenome / Metatranscriptome	306	Y
F010472	Metagenome	303	Y
F011276	Metagenome	292	Y
F018539	Metagenome	234	Y
F099293	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10001442	F010472	GGAG	MSVLSELITSGNQWAAERAQYALEVHEAVGAGQLSPSEAKEILQDLISTEKLEEGAADQQARAALVFGVTQLISLY*
Ga0157203_10001443	F006506	GAG	MKKLIAVLFVMSLTGCASIMEMIPSRWDVNQAKVITDIQQQARRFDCKADQAAQLNELAKSVEWFDIYAKTKPTRDIAKLTGTMDKTIQEYQGRLKTGPVSPLYCDLKAKIIKQQADILAGSVQGRF*
Ga0157203_100014430	F011276	GGA	MIKNLTGVCGLTVSGGNTSFPYIPQNSSNPIQGMIRVNNQDLEVFNGSNWQQLSTNYATVSLDQEVLDVIQWARTQRQLDLNRKTLMENNPALQKAYEAVKRAEDNFDILSKFVENDEPGIVVGYNFNTP*
Ga0157203_100014454	F018539	AGGAG	MSTVYKQAIFAQVAKAKLIYVKNKETYKIVIAFNVHKKIKDNGDIVHIFPAQKQCNYVSGDINYETLQADTEYVLSQARKQLRTDNIEFV*
Ga0157203_100014455	F099293	AGG	MQDYTQRLDNIMLQLQSILDEEYEDNDKIQTAFNNLAIALDEELGV*
Ga0157203_100014456	F010245	N/A	MMKTKRTARKDSNYVIYVAMHDGKAYIGLTRKGSTTVAKAVKERWRKHMSRAKHEDRDWEIYRYIKQGAWTDWSHDVICVIRGRAEAYAYERELVKTLQPELNDQYIG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157203_1000144

Overview

Ecosystem & Geography

Associated Families

Sequences