Scaffold Ga0157203_1000131

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1000131
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26834
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (17.91%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F006840	Metagenome / Metatranscriptome	363	Y
F025233	Metagenome / Metatranscriptome	202	Y
F032245	Metagenome / Metatranscriptome	180	Y
F044374	Metagenome / Metatranscriptome	154	Y
F048842	Metagenome / Metatranscriptome	147	Y
F049561	Metagenome / Metatranscriptome	146	N
F053077	Metagenome / Metatranscriptome	141	Y
F054451	Metagenome / Metatranscriptome	140	Y
F077197	Metagenome / Metatranscriptome	117	N
F078606	Metagenome / Metatranscriptome	116	Y
F082372	Metagenome / Metatranscriptome	113	Y
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100013110	F077197	AGAAGG	MFLPIEFTDEHGPYIEHLNVTHITRISFVNPRNPDAGSKIHLRTGEILKTTMAFDLLSQAIDEAWESASTLILSTVLSEKAKLMKKSDLQNEGIEELDPLTEA*
Ga0157203_10001312	F044374	N/A	MSRKEKEKEFFAHHMDKFRKAQVTDPFFAIKTAFFQKGKYGRQVQLFEGELKRGEDIYIEFIDIKRDALGKETGIEHAFEDRPLFKYKHNPYFAEEYDVKEGTSSNGDNYFAYTIPLSELMVIMPDGSEITHNLYEKRKAEAPKEQVSLSVFPDFENEFIPKLKEVSLDVEESASDILLRIATEFQKLATKIK*
Ga0157203_100013120	F082372	N/A	MSELETGWISALIKCDLCGHESLSVHHVSSNKLECVNCGRMSHYEIVENYTEEA*
Ga0157203_100013121	F054451	N/A	MKTITKSVIKLSEIPEHLQQDPVLQGHKIHTYAEFHIDGIEQDQLTLWLLSQYPTLNRKISFLIHIDK*
Ga0157203_100013132	F048842	N/A	MKNKAGVVLITLLPILLGAAALFGEIRCIYKMCTCNWEPIGKAEIVYTVGTFTGVGIIIGYLNIEDK*
Ga0157203_10001314	F078606	N/A	MIKTKLFFIALTGSFCSWILIDKLLVEMSIIQFIAIEFIVGLSHFIYNDVKRKLTT*
Ga0157203_100013143	F000716	N/A	MIKPMYIMEKLKEQVRNYQLYAGKTYVQYEQDGFTAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQVTIQYSNAIFNTFFPNSPITQFLLADTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFLDLKDAPLALPRLKYEVKA*
Ga0157203_100013145	F053077	N/A	MLYQLPNGKVIHITIEQYLELNPEDIQYLMSIDFGEHILNPFADSAVLENTKEQYYDFDYFPDDDGLEERASDDEPFDDIIDLSSPSDI*
Ga0157203_100013146	F049561	AGGAGG	MTKIKLELEETDMFNAIKKIIDHPNRVEIAKALTSIIAPNERLSSIFFKTYFMGAAPEVLPNGTMITVNPRDLSYKANVEGMKKLGLLNISGHATALIKEFKGFGDYTTYLVNFMNVDDNDKTFEDTGFVAYNQVLSVVEEL*
Ga0157203_100013147	F096905	GGA	MESKIFTSVIGFNFELNLVDNNGQPIRTGARRIDYLSSDTPIVGTKIGGEKWFTNFNEPLLSKIRDYRRRND*
Ga0157203_100013148	F098924	N/A	MNVLGKLFNKKKTYPKDSKFEVLIIGEDRTDFQEMLGITDERREELMKLAFNSYKAEDLYSSACKEAVAGCKHINEVVFTISMMAKLKEMANNPLSAILSGINHGE*
Ga0157203_10001315	F032245	N/A	MQEVFSKLISIGLTPNSFYVLYCIHNNIIPDKSVNTSIEVSRLLSGNYLTESLELSGNSLKFIEEIDGFFKKSKKKTSKNLMGDDFLDNIKLYNELFPKGKLPSGVPARVNVKGLENAFRWFFENFSYSWETVLKATDRYVDEYSMNRYNYMRNSQYFVRKQNTDKTWDSTLATYCDMIEADDYEEPNYFKEHIV*
Ga0157203_100013155	F025233	N/A	MYLLLANLMFVLQLHSGHIIATDNVDGRTIYSVPSAGIEYAYKAEIVQYLETGQFKYNEDIED*
Ga0157203_100013166	F006840	N/A	MKPFKTLRGRAILLDLPKRKESVIQLSAKDEEAMMADAVKMWNKLTVFAVGDKVEEVAVGDQVYVRTSALNMEVVERIDIDGEVKLVLTEGDVVIVW*