Scaffold Ga0157203_1000037

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1000037
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52253
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (60.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F009749	Metagenome / Metatranscriptome	313	Y
F011224	Metagenome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100003727	F011224	AGG	MKKKSTLNAYMAYFDTLGFEWIFNITEYEKKKFWAVLKGDESVDFPIPRHAILRAQANPQRFPEIWAFESSISLDELNEYAKDSPQDLADAIRRCGQNVFKTPKIESVIV*
Ga0157203_100003735	F001008	AGGAG	MTKEKHVPKVFIDGETADRITALTLRDYRAYLKKELKQWKKNPKTDSNPDGYWLHPEDVAGNIRAIEALDLIISHYIEVPEMS*
Ga0157203_100003736	F009749	AGGAG	MTYTWILIIAMYSPAGDFMSKEIVTFNSQKECEAVKVQLSNLDTPMKVKHRGICVTRDHWEGKKKMPGVAYD*