Scaffold Ga0157203_1000009

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1000009
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107950
• Total Scaffold Genes: 173
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 137 (79.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001460	Metagenome / Metatranscriptome	690	Y
F007263	Metagenome / Metatranscriptome	354	Y
F014142	Metagenome / Metatranscriptome	265	Y
F053291	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100000926	F001460	GGAGG	MLGYTEADLNRMTNAVHDAKLFYLKYPSDLLDKSELVNDLQDTVSFLQGLWAEGYFDGK*
Ga0157203_100000927	F053291	GGAG	MITTQELIDYIYDDNLAHFDDRDTSDDCDCYIHTTLTTIVKYMEAIEC*
Ga0157203_100000953	F007263	AGG	MKNYIDENEFYFIKDEMRFCCEESQFVYVCKAHGEQMGCYYCEFDYTQECECE*
Ga0157203_100000958	F014142	AGGA	MNSLNTLTVVVEPFHSMASSNTKDNRIFRTKDGNYISRMAYVYMVASEGLISHRYLTPNESKWVFANRVA*