Scaffold Ga0137358_10343417

Overview

Basic Information

• Taxon OID: 3300012582
• Scaffold ID: Ga0137358_10343417
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1011
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000461	Metagenome / Metatranscriptome	1108	Y
F002604	Metagenome / Metatranscriptome	544	Y
F092575	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137358_103434171	F000461	N/A	MDKLLFWLGLGAAQKGAGSKPIERQRWVASLVVGVLIALLIGAGAFVLLVSQQ*
Ga0137358_103434172	F002604	GGAGG	MLGKLSIIGAVVAVVLIMPTTLSAQMGGAINPGVHVGGVVNPGATVRGAVERGIPGPDLGTWRSPSGQVHRSRKHSKAATKQRR*
Ga0137358_103434173	F092575	N/A	KAPQWMRDVFEELSDMFEELFPHTDKLNLEEMQQRLDELEQPPIAASERPSDSRDSNGEQRRTM*