NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137358_10030426

Scaffold Ga0137358_10030426


Overview

Basic Information
Taxon OID3300012582 Open in IMG/M
Scaffold IDGa0137358_10030426 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3540
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F002396Metagenome / Metatranscriptome564Y
F003157Metagenome / Metatranscriptome504Y
F004392Metagenome / Metatranscriptome440N

Sequences

Protein IDFamilyRBSSequence
Ga0137358_100304262F003157GGAGGMFDPDASQKRENTDLLGFARFGGLDRLDWLMILASVLLGTVAKQHHVLDLPDWFLEWVSPFLLMAFGYKARRKITEVVESRRDRRKDTREE*
Ga0137358_100304263F002396GAGGMRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIVLLEILLGLFFIGCALAARARLRIQARSQAKEGPEGSTNAKAKWFDRYDVLMILTVIVIYSSMSGLLRHAGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDRKAETHDGRPHMDAGEKQEIARKETVERCL*
Ga0137358_100304264F004392AGGAMPVNGPETIADSKTSQPVPSEGRSVRAARNAKPAVGRGASTRRRRDRQDSSGTNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNNPAS*
Ga0137358_100304265F001528AGGAGMSEKNQIVVVLIVALFLGAFVDRITALKIVAGVVLLWTLQNQPTVFECIRTLFSFVQRRPSVREYRGGVTTVRAS*
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