Scaffold Ga0137358_10013132

Overview

Basic Information

• Taxon OID: 3300012582
• Scaffold ID: Ga0137358_10013132
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5204
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000232	Metagenome / Metatranscriptome	1513	Y
F009833	Metagenome / Metatranscriptome	312	Y
F079644	Metagenome / Metatranscriptome	115	N
F098730	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137358_100131321	F009833	GGAGG	MHSPFEILKKEPAGSFSRFEPVSDFASASIRIKELTTLSPGEYVVFDQRTHNDIAARSSFWVDPRRE*
Ga0137358_100131322	F079644	GGAGG	MYPGYQPKPDDVFHAVGYTTRDISDNTHFHLHRISDRVRMENENLWRQLGPLVHAMQSGKVKREFVEVLSVDPFLGNYEMPYTGPHREIFVSIEYLSEAAFRLCREYGIRHPDVIEKVKRADIPGNHGITLRTVHYSRI*
Ga0137358_100131325	F098730	N/A	MECATAKILFEHYAKTAMENFEATDNLSGLVGQHGQFEEAKKYAEGTRDKCSAARMALEKHWMEHSCREGIANRS*
Ga0137358_100131326	F000232	GAGG	MTASRKPVSIDAMKHPKQNKRVPPTHPPALAVPSYHRILVKHGLIEKTLPIPDAYEVFLQVGADPEVEKLRRKVERGSKIKRVPALYLATAMALQGMTKHELHALKLRIAKRI*