Scaffold Ga0138256_10201399

Overview

Basic Information

• Taxon OID: 3300012533
• Scaffold ID: Ga0138256_10201399
• Source Dataset Name: Active sludge microbial communities from wastewater in Klosterneuburg, Austria - KNB2014incub_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1776
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Source Dataset Sampling Location

• Location Name: Austria: Klosterneuburg
• Coordinates
  • Lat. (^o): 48.3
  • Long. (^o): 16.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024777	Metagenome / Metatranscriptome	204	Y
F025938	Metagenome / Metatranscriptome	199	Y
F058560	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138256_102013992	F025938	AGGAG	MVVIPDKIVDLLSAMFEDVRDKQFIIGDTLIEIVNATGDKGGTIAYLAGRLGVSASTLYDYYRIAKLWTPEYRAMYQALDWTIYRNADPNDPEDRALLDRCVDNGWNASKFREEKYPALKDPNTIIGKMIALGKRIYEQDTLDIEQREAIHKAIWLLEEVMRELEVVEFADVKF*
Ga0138256_102013993	F058560	GAGG	MGKSDVRCPKCGKATNEVELIYPRTNEQEERREQAFICQNCLYVFSESDAENNNYTFRNEK*
Ga0138256_102013995	F024777	AGG	MKGVKMDAELIFAEEVEVCPKCGSTEFWENRIICVGDDPTDEVLASIECKGCGAVFYARDYYRRRFGKPEDDEEIPF*