Scaffold Ga0129352_10325037

Overview

Basic Information

• Taxon OID: 3300012528
• Scaffold ID: Ga0129352_10325037
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 740
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.0306
  • Long. (^o): -76.0464

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007835	Metagenome / Metatranscriptome	344	Y
F024679	Metagenome / Metatranscriptome	205	Y
F050768	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129352_103250371	F050768	N/A	TAVAVAYSGELYLYLSLVFGSFIRDIQNFINKIRGK*
Ga0129352_103250372	F007835	GAGG	MPFSPSTVRNTREQFVLQKIEYYKVMEHISKSDWERHYFDTYKEAINMFKKLKQTKRRVLIFACRDNELGELSTGLNDRFKDE*
Ga0129352_103250374	F024679	AGGA	MSCNILKNRGDITLESGVKSLLARRSATQKQVKSTIFRGLTIKSIPDRIKTLLTTN