NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134099_1052204

Scaffold Ga0134099_1052204


Overview

Basic Information
Taxon OID3300012521 Open in IMG/M
Scaffold IDGa0134099_1052204 Open in IMG/M
Source Dataset NameSwitchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 10_41_5_180_A2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1099
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Source Dataset Sampling Location
Location NameUSA: Dartmouth College, New Hampshire
CoordinatesLat. (o)43.726Long. (o)-72.1429Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000770Metagenome / Metatranscriptome897Y
F004718Metagenome / Metatranscriptome426Y

Sequences

Protein IDFamilyRBSSequence
Ga0134099_10522041F000770AGGMARTCALIAPVQPILHQVLCSNERLPNAPKHYEMDHNKSLGSNLLDR
Ga0134099_10522042F004718N/AMFRYYMKLSAKQVELVQLMHKFVP*NRIGIFRNERTRSTPLDPKLMFWCV

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