Scaffold Ga0129325_1050590

Overview

Basic Information

• Taxon OID: 3300012516
• Scaffold ID: Ga0129325_1050590
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_RNA1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1716
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.0754
  • Long. (^o): -76.1533

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048336	Metagenome / Metatranscriptome	148	Y
F105292	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129325_10505901	F048336	AGG	MKHIKLYEQFVNEAVSFDKKGIKSKLEDKVRIAKIAVDKWGGSYENVLAKAEAAAKSGKLPKYTEHLNVQGDEKQDNYDIFQGRNAVQLAEKISKVIKKYKKYEVEQSSTGAAAGWSGTMRSTVSGDIKGHANFNNGSNSYLIAVTCGGGIDRSVKDKMFQEIYELMFVLDQYNSSDGGVMFSLDTGTNYDTIGLKNSSYSFNNIMADKLKNTMNN*
Ga0129325_10505902	F105292	N/A	MKPVKLFEQFVNEAKVDKKYFDKVVKVLSKSKHPFTVMLVTKWDEVDIIIGHDAPDNIADDIIQKLDSAKLNWGGSSGISISGDSSNYSRREYDEIVRINGGHRDY*