Scaffold Ga0157330_1003060

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157330_1003060

Scaffold Ga0157330_1003060

Overview

Basic Information
Taxon OID	3300012514 Open in IMG/M
Scaffold ID	Ga0157330_1003060 Open in IMG/M
Source Dataset Name	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1269
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.9076	Long. (^o)	-79.0506	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077882	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157330_10030602	F077882	GGAGG	LVHKEKIMKPSALLVAAAIAIVPGFAVAKDQHSAAKSKSQGYGYAYAPMDRSEAIQTCNAEAAKWSYRDFQSTQLTAYRDCMFRHGQPVE*

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