Scaffold Ga0157340_1003478

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157340_1003478

Scaffold Ga0157340_1003478

Overview

Basic Information
Taxon OID	3300012473 Open in IMG/M
Scaffold ID	Ga0157340_1003478 Open in IMG/M
Source Dataset Name	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	866
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.9076	Long. (^o)	-79.0506	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157340_10034781	F002850	N/A	DALARYRHAQRDVTAQGKDQLTATRASLEAKASRLRAQLELGQAEYTACQDRAAQADPDHPVDCSGYARAVEQNSGRLEQIRLWQQRIDAEAGEFSGIAGRFADLLENDLPRMEEHLVAIIASLEAARRVRAPAS*
Ga0157340_10034782	F004352	GGGGG	MISRPEQDGDRQLRLLGDAWEKAAEHWRDGPARQFGTAQLTPLLQESRSYLEALRKLMDLLETAERETEG*

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