NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138260_10731373

Scaffold Ga0138260_10731373


Overview

Basic Information
Taxon OID3300012419 Open in IMG/M
Scaffold IDGa0138260_10731373 Open in IMG/M
Source Dataset NameMetatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 24hr light incubation - RNA10.B_24.20151111 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1115
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location
Location NameAntarctica
CoordinatesLat. (o)-64.775Long. (o)-64.053Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000204Metatranscriptome1608Y
F018498Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0138260_107313731F000204N/AVALQRASEDRKVGNQDFQKTVADQAATAEILGKALDKMAKFYDEAAFAQTKKQAPPVPQMEYSKSKGAGGVMSMIEKLIYDTKDITAKSKKSESDSQAAYEELIADTNDSIDGLSKLITSKSKAKAGAKKDLSLTDSDLGDAVRELEDLGKTNADFHSDCDYVLKNFMIRQKARSEE
Ga0138260_107313732F018498N/AKAQCDNDLAEAKEDLGETEKALAEDQKFSGNVEKTCKEAETNFQERKKSRLAEIQAVAETIEILTGDEAKDAMDTTFSFVQVTTVSKQRKMAAAVLRKAGFPALSMLATSVELDAFTKVKAAIDKMIADLKAQTADEVKKNNWCKSELQENEMTTMKTKDLKADLEAKSAELESTIKTLSEEI*

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