Scaffold Ga0138262_1177433

Overview

Basic Information

• Taxon OID: 3300012417
• Scaffold ID: Ga0138262_1177433
• Source Dataset Name: Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 72hr light incubation - RNA13.B_72.20151113 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1211
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location

• Location Name: Antarctica
• Coordinates
  • Lat. (^o): -64.775
  • Long. (^o): -64.053
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021434	Metagenome / Metatranscriptome	219	Y
F063773	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138262_11774331	F021434	N/A	NQQFKQQKVNNMADFSDFGSGSRFSSPRMQAPVNAGFGSSFGSFLGDVSSNIISPLSGLFGGIAPFFSQQSSGQPALATRGTSGGQETRGSGQQNAFVGGVPNILGQAARFLKTPGGSAAIGGGTALLGGLFGGDGQKMRITRKMKSQYRAILNLNMGNIDLASQMLGVSSEMFIQVLLKRFRNDGAVVTKAALRKTKRTVNRLKGMCDMYDSLRPSATRRKAPMRRASTTLISNK*
Ga0138262_11774333	F063773	AGGTGG	MAQEFVINSRSIETRLNTLLPSQAGEGAGIDFSASTMIIPTI