Scaffold Ga0138259_1716038

Overview

Basic Information

• Taxon OID: 3300012416
• Scaffold ID: Ga0138259_1716038
• Source Dataset Name: Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 24hr light incubation - RNA9.A_24.20151111 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 617
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location

• Location Name: Antarctica
• Coordinates
  • Lat. (^o): -64.775
  • Long. (^o): -64.053
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068127	Metagenome / Metatranscriptome	125	Y
F070551	Metagenome / Metatranscriptome	123	Y
F097237	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0138259_17160381	F070551	N/A	MNYPEAGGAKGLIGWTNDEGNILSGYKNEPRPKQDAPTTTPSQPKAASKEIPF*
Ga0138259_17160382	F097237	N/A	MSINNSNNGSGKQKDWVLFPFDATNERAIKLDFSGNVNLDNGNKGTILGVKGTSRDGNTKFVKIFAQVGVLFRGDDKFT*
Ga0138259_17160383	F068127	N/A	VQVQKNSIKDSIKKQTTETKLTALYSDWKKENDLIEKSFESQQQTIKTNGGQNNVNKQQQQW*