Scaffold Ga0138258_1130286

Overview

Basic Information

• Taxon OID: 3300012413
• Scaffold ID: Ga0138258_1130286
• Source Dataset Name: Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA6.ICE_1m.20151110 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 915
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location

• Location Name: Antarctica
• Coordinates
  • Lat. (^o): -64.7711
  • Long. (^o): -64.056

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011729	Metatranscriptome	287	Y
F044282	Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138258_11302861	F011729	N/A	NKLAGVCVDMCKEVGAFPKCTCPDFVAPDSTPGVMTWPELLEHLDNLSEWGHGQLKAWSQQASALQEGVEVDAAVTEQACLAEDAKVRAALQNKLAGVCVDMCKEVGAFPKCTCPDFVAPDSTPGVMTWPELLEHMDNLSEWGHGELKAWTATAR*
Ga0138258_11302862	F044282	GGAG	MDNLSEWGHGELKSWSATAGALVQKSAKGTQSEKACASEDITHRIKLQNKLAGVCVDMCKEVGAFPKCTCPDFVAPDSTPGVMTWPELLEHMDNLSEWGHGELKGWAKVAR*