Scaffold Ga0134059_1240790

Overview

Basic Information

• Taxon OID: 3300012402
• Scaffold ID: Ga0134059_1240790
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 859
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042835	Metagenome / Metatranscriptome	157	N
F058881	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134059_12407901	F042835	GGAG	MAQLFSYWHSVRYHGGKLLLFVLLVSGILYGQGQPVEKISPDVRTIQKAVNDVVGTPVPGGGVLQVAKGAYLDGYGIVVSLEVAFDPPVNPFSPQKTPEEIRTTAAQRLKDVQEKVTNVLKQKVVQLESVGPAESVSVVLNILNTNPAYLPDMPSQIIF
Ga0134059_12407902	F058881	N/A	ARRHLETCKECRFEVEQFERIHLTLRTAPELDPPRRVVFAPPERRSWLSWFGWRSAAAASAFAALVAGIVIGFSHVDYNRIVNEVHQADRAWLAVELNKRDEEIQRLRGELAYYENFQRTVMRETLENGSAIQLLAQRTISRR*