Scaffold Ga0134055_1255095

Overview

Basic Information

• Taxon OID: 3300012401
• Scaffold ID: Ga0134055_1255095
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 893
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005332	Metagenome / Metatranscriptome	404	Y
F082482	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134055_12550951	F082482	N/A	WLVGDTLRFGTSLVPDADSLELRRVSPDAPYPASVLEVVTPP*
Ga0134055_12550952	F005332	AGGTGG	MTRLRLTSFGVTLFSVTLFLSCGGDRSRSPTCGMAQLIGPSLIQDRLRRLPFVLTEAPRGLPGTLPVRVVGTPQQSTVLVTYTKGALTMEYQGAGFPATSVSDTTAYAVLVVDDSTQRAQGVLIYESHRPPEGYPSIGSLTGQDRTMPVYGVRVDWAGVSNPKCPLLGTPAAPPSSAQ*