Scaffold Ga0137390_10882551

Overview

Basic Information

• Taxon OID: 3300012363
• Scaffold ID: Ga0137390_10882551
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 850
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000437	Metagenome / Metatranscriptome	1146	Y
F025132	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137390_108825512	F000437	N/A	MRFNRFVAAVLLLLPAVALNSVLNAGDKTLWKPVAFAIVKFNDEAPKSWNIYHTEKKGLLLVHLWKRYLLVDTKEQEVYEIDPQTVKPRGEDVEWSPADKPEQPLETPEWKTRDVGTMQLVRFRLGKEGHILELQLPLLTNGKPAY*
Ga0137390_108825513	F025132	N/A	PGIVRGTRRLFVHSWREGQRYERLAVNADDYDRFHSGDSVVVAVEPGALGIPWYYGIYRH