Scaffold Ga0137390_10073754

Overview

Basic Information

• Taxon OID: 3300012363
• Scaffold ID: Ga0137390_10073754
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3346
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012367	Metagenome / Metatranscriptome	281	N
F031805	Metagenome	181	Y
F037102	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137390_100737542	F012367	GGTGG	MTRRELESWLLREGAVEVKRADRHRHFSLRGHHVVVLGHDPQTLSATSLSLVMKQLERAGYRRERLRRE*
Ga0137390_100737544	F037102	AGGAGG	MNERARDLTQHVLHPEMHEKILLRAAELVAMGWTRGTAARDATGQKVRSTAPQATAWCVVGAVDRALYELWTVDVYALLGLEVDAYDTAPCPLEVLRALRRPLQRVLGRRDLAHWNDHGCPGPAAAEQLLRDAAATTARSCDCSGA*
Ga0137390_100737547	F031805	N/A	MLTRFEEPERSLLRSTLAGVGLAKATVVAPAIERFEEWRTWLRCASELSTVLLQAKVSEALDALPRGREPAPPGERFRRDVLSAMPDIEAMELVERFFHLGKRIVGSPNPIAIFLAGCRECLPEWELQAAKPRGSGAASTSSVCLRGQNSA*