Scaffold Ga0137390_10064284

Overview

Basic Information

• Taxon OID: 3300012363
• Scaffold ID: Ga0137390_10064284
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3582
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020566	Metagenome / Metatranscriptome	223	Y
F029226	Metagenome	189	N
F045330	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137390_100642842	F029226	GAGG	MSEQKEKDLFPQNARLAQLSDSLYGSPSELDAREARELLRRAGIDPEDLKARLYRRFDALAKEYAAAGRPVPALLKQALSDLRPGVPGSPKERTLVREARAAIRSVIDHAQRMQERLARLPRVTLATAYRNKKELSERDKKLLDDLAEDLLKRNNRSRPKDGR*
Ga0137390_100642843	F045330	GAGG	LEAQQSLDFEELAHRLTAFGLRTFNEFGLGGRDSTVAGVGLSVDDFVSAVLVEYVEGKLQHQASRGDLFSLLATALRNDIIDSLRKAAHAHEESRSSVPAERVADAVPLSLDELPGSTIDFAGSIDEERYGERARTAFAGEPELAEVVRAVLELNLYKPREIAAELGITAAEVQNRKKRLQRQLIDHNLVERKTA*
Ga0137390_100642846	F020566	AGCAGG	MSTDFAFTPRSLTASEYVRELFEPTDNAAILVRNRSTGHTVQTIAKAETIVSPRFQSWLAGRSASGY