Scaffold Ga0137361_10034240

Overview

Basic Information

• Taxon OID: 3300012362
• Scaffold ID: Ga0137361_10034240
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4059
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035708	Metagenome / Metatranscriptome	171	N
F071088	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137361_100342403	F035708	AGCAG	MLTLDGVGASNCQRPFCVHSQLLTTSSGHDVIVLVVETYCNTGISGITDSSGLNFTLRVSHANDCYGTLWEYYAIATARLNQDNITVIAGGCCNTIMGMQVFAVHAANTIGVFDPDPSTPAAVSCPGTGCGDCTASFGQGTCSASIHTLTLAFVVATTVIKGAPPCGTHYQTGQVAGFTSLMPNQNNRFEVDYTITSIPQTTVVFACNGTDASSILVDVISVHTDSE*
Ga0137361_100342409	F071088	N/A	CVCIVAPIDAGDAEDEVVGERYLTRNGKIRMVVLTKSSRLVSWTAEYVKTGQALEPIVQKAFLETFLHLISMGMIVKE*