Scaffold Ga0137361_10006345

Overview

Basic Information

• Taxon OID: 3300012362
• Scaffold ID: Ga0137361_10006345
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8078
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016134	Metagenome	249	Y
F039072	Metagenome	164	N
F078506	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137361_1000634515	F078506	N/A	VSTAYTTALVKGAKGQRDMQRIPIDTSPFFTILPSEVLFEIGAYPGDLKVRLELERGDSLEARVYSVVVAAQGREDVTLAVTFEGAQPVLGAKFPEDLGLDVDSESGLLEPSRHHGFAFNYEP*
Ga0137361_100063457	F016134	N/A	MPKVMLTVELKELHDRASEATQFLKSKVEGKMRAKGTQLQIEGAKTKQVKLLLHKFLHHQGLDHYRVLSQSGVLEVTPPEKHILHLPEHVGSPPSAAQTTPYLFPQTPALTPEKKRKAKPKHKYE*
Ga0137361_100063459	F039072	AGGAG	MRGIILTKFMMSLRDENYRVLTGAAIDRGISVQELLRAVIIPDWVKETPRGIVADNWPTIRPHR*