Scaffold Ga0137360_10054195

Overview

Basic Information

• Taxon OID: 3300012361
• Scaffold ID: Ga0137360_10054195
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2902
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013564	Metagenome / Metatranscriptome	270	Y
F044081	Metagenome / Metatranscriptome	155	Y
F080410	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137360_100541953	F044081	GGAG	MPASSSFLEAPAVRRGISVWRRFFTRVLTGPTPKAEDEIAEYLERHQHDLPPALRIELERRSMSP*
Ga0137360_100541955	F080410	N/A	MPNEEEGWIAEFESAGEDEVRIRIYRGSGMHPEAKFHAAVRWLREQARARKLREEEIHRYVWWTLCAAVLSVIVGVIVLIVMWFGR*
Ga0137360_100541956	F013564	N/A	VTFKTIKLKKTPAGPAQTFPSEIKTVQAAIAFVKSLEPKTRAKLHWKLAASALAALHTGHIREGTYDRANKAMRRALASERWLAD*