Scaffold Ga0137360_10020640

Overview

Basic Information

• Taxon OID: 3300012361
• Scaffold ID: Ga0137360_10020640
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4396
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022965	Metagenome / Metatranscriptome	212	N
F072415	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137360_100206403	F072415	GGAG	MEHFAHQQNLAHCRRQLAEAELATSSDEIRHSVLMRLLAEEEAHGLLITDDGDRAMNANGDAR*
Ga0137360_100206406	F022965	GAGG	MIDTGTGDKVGPTLIIKPLTECSAGELIRLTSGAWAIVADDSKARRIFVISGDDAPVTFVLPEDSRESCLSYGTGFRVVSVHASFVGIHTYGREGFDPIGKLIVSRPFVNGERTRRYFAAPADQPLFLDLDSFQIVSEPRGYRASFQDWEVSISGPGPHEMVTLVKSPVRGSRP