Scaffold Ga0137360_10001864

Overview

Basic Information

• Taxon OID: 3300012361
• Scaffold ID: Ga0137360_10001864
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12487
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000309	Metagenome / Metatranscriptome	1327	Y
F012059	Metagenome / Metatranscriptome	284	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137360_1000186411	F000309	GGGGG	MKPYENSLERILESAIVVSWADLMRGAQTGLIHIEYGFAAGGTLDYLQVWSSVTRGHWLLACGYWMSASRLHGTGVHFDNKYQSEGLAHILEFVMQHQTAFVLPPDRGRQGLLQIPTPTEEESTAAAASVREAFDRFGSVLTHPALA*
Ga0137360_1000186419	F012059	GGAGG	VRRQYLHLSAYSCDKCKGPVVSGSLAVRENEISKETEIRQVGAICLSCGHRQGKMTELGITRQFPPVEWESANLVDVSHLATAFEEMLNRTT*