Scaffold Ga0137385_10172774

Overview

Basic Information

• Taxon OID: 3300012359
• Scaffold ID: Ga0137385_10172774
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1895
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019885	Metagenome / Metatranscriptome	227	Y
F051297	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137385_101727741	F019885	AGGA	MKEKNSPSAVMSETDSPEASHSSIEEGVQRHWQGVVKRRSFLKGLGIAGATLSAGALMGTEGNAQTTRNSGKLSKGD
Ga0137385_101727743	F051297	N/A	LGIGGHAQDAGRVIVKVPFEFIAGGTTLPAGTYTIGRLSPAIHPALLIDNKDAGLFAVVLPSVPDGDSARQAELSFERLGDKVFLSKVGTPAGVYTILTPRAATKLAQMNDHGATSSSGTN*