Scaffold Ga0137366_10214086

Overview

Basic Information

• Taxon OID: 3300012354
• Scaffold ID: Ga0137366_10214086
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1436
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000863	Metagenome / Metatranscriptome	856	Y
F017532	Metagenome / Metatranscriptome	240	Y
F103712	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137366_102140861	F103712	AGAAGG	MTDNRMGVPLITDILDVLDRHGYTSSDNAHTARAILLISDLAHIYEGSQDHPFGPYINEMPSRTEPASPEPVGPDAVLIPAGEVKTLLVALDIAADYQRDRAEMCADCADQSCPSCELRLQDAQACDDLAARLIQSVEASAAATTRHRERASQPQSAADREVGQ*
Ga0137366_102140862	F017532	GGA	VTRQPDDGEPGRRPPDYVIVVAASDWIKDRYPAAASLTHALQAGQDRHRDPESDLEAEP*
Ga0137366_102140864	F000863	AGG	MPTTGDTERTYRLPEDGPLPDLPLYERLIDDGIAAADAQGSPVDHLTARRLAIWLAARQQPPVFAQGLVRFVSTGAISPALKTQLRIHARSGNYSDRPE