NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137367_10591430

Scaffold Ga0137367_10591430


Overview

Basic Information
Taxon OID3300012353 Open in IMG/M
Scaffold IDGa0137367_10591430 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)777
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002474Metagenome / Metatranscriptome556Y
F006474Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0137367_105914301F002474N/AQISVVIEPGASPIHARMRAALAGLDQGAFTEGHELDRKWPVPKEMVGRRLSQEEAKRLLAKFE*
Ga0137367_105914302F006474N/AMEVDMRGAENDEPEMSFRRGYQQGTIEVFYAIERFLDPATREVLQAWIEKDVFMWRVKAMLGHPPNWRLNMLAGPRPAGRPLDRLDLRYAAAVTRT*

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