NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137367_10153729

Scaffold Ga0137367_10153729


Overview

Basic Information
Taxon OID3300012353 Open in IMG/M
Scaffold IDGa0137367_10153729 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1678
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003037Metagenome / Metatranscriptome511Y
F007915Metagenome / Metatranscriptome342Y
F040037Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0137367_101537292F003037GAGVEFKCPLCGKDLDDDKAMANFLVCGDSSHGLLRFFTGDGCYFTTDQKVAEDLMKRGKRVHVVDPKEFFGNQTVNLEQKASCVRNH*
Ga0137367_101537294F007915GAGMSLAEAAKPALPSSTLRSYAMIGIVFYAFGLVLNEIGNGLAQLWLVPYADTISVLGFVIALYTASLAGLGTRLTVLIGIIYGLGIFYVSEPDATYVASGLRIGSYNMTHSVGLGLIGFTMMLLIGLAFYLTRMKSARGALPKQDPGSTS*
Ga0137367_101537295F040037N/AVLLWVLEDSGLRCHNISRVTITVPAAWTSRWLASLGSLGAFVSFAVATGGNLDRAISLAFTLLVSLLPSCILAPTLFYRRLEPGIIAKIRQSKAAVTMARFFPQPSGPTLPPSSMPTLRSVKVTEETKQTSEPHP*

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