Scaffold Ga0137367_10153729

Overview

Basic Information

• Taxon OID: 3300012353
• Scaffold ID: Ga0137367_10153729
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1678
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003037	Metagenome / Metatranscriptome	511	Y
F007915	Metagenome / Metatranscriptome	342	Y
F040037	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137367_101537292	F003037	GAG	VEFKCPLCGKDLDDDKAMANFLVCGDSSHGLLRFFTGDGCYFTTDQKVAEDLMKRGKRVHVVDPKEFFGNQTVNLEQKASCVRNH*
Ga0137367_101537294	F007915	GAG	MSLAEAAKPALPSSTLRSYAMIGIVFYAFGLVLNEIGNGLAQLWLVPYADTISVLGFVIALYTASLAGLGTRLTVLIGIIYGLGIFYVSEPDATYVASGLRIGSYNMTHSVGLGLIGFTMMLLIGLAFYLTRMKSARGALPKQDPGSTS*
Ga0137367_101537295	F040037	N/A	VLLWVLEDSGLRCHNISRVTITVPAAWTSRWLASLGSLGAFVSFAVATGGNLDRAISLAFTLLVSLLPSCILAPTLFYRRLEPGIIAKIRQSKAAVTMARFFPQPSGPTLPPSSMPTLRSVKVTEETKQTSEPHP*