Scaffold Ga0157138_1001234

Overview

Basic Information

• Taxon OID: 3300012352
• Scaffold ID: Ga0157138_1001234
• Source Dataset Name: Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4655
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Fraserville, Ontario
• Coordinates
  • Lat. (^o): 44.16961
  • Long. (^o): -78.4089

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001507	Metagenome / Metatranscriptome	681	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_100123414	F000263	AGGAG	MNSEDIGLPPHLQRMVNAGVNGLDIMHGELKNLLLIAEQELVEAQAVEDLSEEAMDSMDRTRCEGYLDALVNLYNLTYQLSFAIGEKQ*
Ga0157138_10012343	F000311	AGAAGG	MYFELTAPSQVAFARATWEAEMIGLDPQTIAPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTEIYNRR*
Ga0157138_10012344	F001043	AGGAG	MSDYKDGFEDGYKFAREEMMEKLSEIDIADIDSWILDRLSEMIEGGTL*
Ga0157138_10012349	F001507	AGGCGG	MDTKPYAIHELVTAIYEDNYSHFEFMENMNGGDCDCNLHQTMNVIAAYQEGLVDGPWGDYL*