Scaffold Ga0157138_1001100

Overview

Basic Information

• Taxon OID: 3300012352
• Scaffold ID: Ga0157138_1001100
• Source Dataset Name: Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4932
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Fraserville, Ontario
• Coordinates
  • Lat. (^o): 44.16961
  • Long. (^o): -78.4089

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F049484	Metagenome / Metatranscriptome	146	Y
F093773	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_100110016	F093773	AGGAG	MYDIVTNPIPRSGLWATPTLEQIQTQIEDFPPEMRAQMHHVMMLTLNACNKLVEDNILSKEVFAQ*
Ga0157138_100110018	F049484	AGGAG	MVTAEFITAGLELAKGAGLAMYQKVGERDACGFGWVEVYVDRTNSKQAKELLKAGFRKDYKPKCLSFWDPAGIPTQ
Ga0157138_10011002	F000652	AGAAGG	MKVIVETVLTQELEVPDNWDRYDVFDFLAENQSFRTAFQGVSNEDQTARIIDLGVVTETVTEMGEEAFDE*