Scaffold Ga0157138_1001076

Overview

Basic Information

• Taxon OID: 3300012352
• Scaffold ID: Ga0157138_1001076
• Source Dataset Name: Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4996
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Fraserville, Ontario
• Coordinates
  • Lat. (^o): 44.16961
  • Long. (^o): -78.4089

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F006385	Metagenome / Metatranscriptome	374	Y
F039631	Metagenome / Metatranscriptome	163	Y
F056558	Metagenome / Metatranscriptome	137	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_100107613	F039631	AGG	MITLDKNTIKSAKFGHLNLEQRIQLAAEMLANGEVVSFRGASAETYRKVEALANRIKNEREFPQCPCGECD*
Ga0157138_100107615	F093845	AGG	MKVTLTSTTGATKEMNFDTKDHILEFIELYKATLHIGQAVCIDAPLVGIHSGWIQGSAPKM*
Ga0157138_100107617	F056558	N/A	MGILDNFENALNDNFEFESNPIVETDAMGREIFWQDMGRPEEPNLAVKLFSETCCTNCDCKAT*
Ga0157138_10010762	F000447	AGG	MGYIEIFRIDNEGAGWIDLAQANNDELFNLEVGLLNEGALFTTKEAN*
Ga0157138_10010764	F006385	GAGG	MILDSGTLIAIVIALAGSLTVMGLFWKQNIEMQREIRRLQIALRTERLK*