Scaffold Ga0157138_1000682

Overview

Basic Information

• Taxon OID: 3300012352
• Scaffold ID: Ga0157138_1000682
• Source Dataset Name: Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6563
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Fraserville, Ontario
• Coordinates
  • Lat. (^o): 44.16961
  • Long. (^o): -78.4089

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F075874	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_10006823	F000961	N/A	MSTPEIDPVKYGVLWERVANYERRFDEMSAKMDKMENNVEKLVALANQGRGGFWAGMAFVSFISSAVGFAISWAKGH*
Ga0157138_10006829	F075874	AGGA	MNMSDPKTKRITIPVSCDIDLIRNRLAADTGIQMTYTQLFNFLVHFYVERASEPKSKWRSLS*