NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157138_1000621

Scaffold Ga0157138_1000621


Overview

Basic Information
Taxon OID3300012352 Open in IMG/M
Scaffold IDGa0157138_1000621 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Baxter Creek, Ontario, Canada - S37
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6991
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (65.22%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameFraserville, Ontario
CoordinatesLat. (o)44.16961Long. (o)-78.4089Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F001043Metagenome / Metatranscriptome794Y
F001507Metagenome / Metatranscriptome681Y
F036238Metagenome170Y
F082666Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0157138_100062110F001507AGGTGGMDTKPYAIHELVTAIYEDNYSHFEFMENMNGGDCDCILHQTMNIIAAYQEGLIEGPWGE*
Ga0157138_100062113F082666AGGAGMIETAEALPESIQRAVDLGISGIDIMHGELKIMMLVAEQELALAIEAEELSEEAMDSMERTRCEGVLDTLVELYRLTYDISFAIGEKNDN*
Ga0157138_100062115F000441AGGAMSDEYINDQLNKAQQLLWGGSETENIEAHNIISKLIKDRVEQVDLV*
Ga0157138_100062116F000852N/ALKGDYQMATKREYLKQQGITVGVRGRFSGAAKVALAEAEANGIKFTAEAPVKKAK*
Ga0157138_10006214F000311GGGGGMYFELTAPSQVAFNRAIWEAEMIGLDPTKLSALTFNVGTGSIEKVSRIRDKFNLKETYTSDYEPTGY*
Ga0157138_10006215F001043AGGAGMSDYRDGFEDGYKFAREEMMEKLSEIDIADIDSWILDRLSEMIEGGTL*
Ga0157138_10006217F036238GGCGGMGDRANFGFKQSNDETIVLYGHWAGHDMLSNLAEAVEKARPRWTDESYATRIVISNLVGDNWHETTGWGLTVNNILDNEHKIPVIDWRSGTFSLHEEASWEEDTKVKGMMDEPMFTMTLDSFINKYSKVSA*
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