Scaffold Ga0157138_1000352

Overview

Basic Information

• Taxon OID: 3300012352
• Scaffold ID: Ga0157138_1000352
• Source Dataset Name: Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10123
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Fraserville, Ontario
• Coordinates
  • Lat. (^o): 44.16961
  • Long. (^o): -78.4089

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001298	Metagenome / Metatranscriptome	727	Y
F021297	Metagenome / Metatranscriptome	219	Y
F088512	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_100035211	F021297	N/A	MSNTVTISQGNTFACSFVWTPGPSGPANLLTTTLTSTFEDKCGKQYPLTVTKALDGLSFTVSYAGDTADWSVGLGRWDIKFAFSSTSISRTEIFRVNVIDSVTA*
Ga0157138_10003522	F001298	N/A	MSLYGKEFLDDAKEMVADYGVPGSTAGGTLTFQCLISDPAYTTSLEAGGYVERTQYSVRLPAVTASWSLPDGSIGASAATLSGGFPIPSLGIGKKLTVGGKVVRVNSQTHKPASAWITLVVMDADQ*
Ga0157138_10003524	F088512	N/A	MGTISVRHICEGVLDAYLTANSGISGVAFYTGDNAEINVLPKAVILCDSARTPAELPEGLGNFHCSVRVTVFSNADDTTLTDHRARVAAIAGVMADIPAIKAAFVAGGDAACYDVTPESEDEGRDERSWASVLSYDVFVVVNPQP*