NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157138_1000297

Scaffold Ga0157138_1000297


Overview

Basic Information
Taxon OID3300012352 Open in IMG/M
Scaffold IDGa0157138_1000297 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Baxter Creek, Ontario, Canada - S37
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11077
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes → Paludibacter propionicigenes WB4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameFraserville, Ontario
CoordinatesLat. (o)44.16961Long. (o)-78.4089Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022886Metagenome / Metatranscriptome212N
F036239Metagenome / Metatranscriptome170Y
F087181Metagenome110N
F090305Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0157138_100029710F036239N/AMKIKGWEKISGFTYKGYSIVNPIHNAGEEVYYATILNLNHVVASMWDIKLTSNDNTGVITFRILDSVTQHLLAKSHLTKTNIDTLRKFREQYEMLVDDILEAVQSYTASKVTKNINGGTTGIINQIQSTGTNVLYGSSSLSTTTPANLIQTLQTLQQQIDDYNKKL*
Ga0157138_100029712F022886N/AMITITNWDKLTRLFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQKDHPHKDEYLMLCGVSEYWLNKKELENVDSVYEAIVDVVVRHNMKVKV*
Ga0157138_10002973F090305AGGMLTIQNIEKLNDTYFADWQVAEATARRPTKWLPTEHYSISLGKGNSGAAILIDRWINPLTKQYHVYVCYDEFSNRIYEGAFSKRVIMDKGHFLKNMMGYINYEYEMRKQK*
Ga0157138_10002978F087181N/AMSFGEIVFALVMSGIVGLWVYGIIITDGDTIRRILWDDTMLGWGWRKLFGETKKAKQAPIPSFQSIPPPPARRLTAKKAAPKGFSTSSLNVPPLNHIGKPLVIQNWDRIAGMATMVFGKRWFVVGALHTSNGYECTLASSQSINTTTFYIYDTMYDSHRVSVYCGGRTEIMDVGVCKDPNRLLYELAYTFNEKFR*
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