Scaffold Ga0157138_1000273

Overview

Basic Information

• Taxon OID: 3300012352
• Scaffold ID: Ga0157138_1000273
• Source Dataset Name: Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11998
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (9.68%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Fraserville, Ontario
• Coordinates
  • Lat. (^o): 44.16961
  • Long. (^o): -78.4089

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F002038	Metagenome / Metatranscriptome	600	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F014261	Metagenome	264	Y
F015597	Metagenome	253	Y
F058813	Metagenome	134	N
F105031	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_100027311	F105031	N/A	MHIIRPNTKPALWWLFPWSYARTLHTAANALRALSDSQEEAIVLQKHIIADQSEEIANLRRRVEDLNEIIHGPRI*
Ga0157138_100027319	F015597	N/A	MSDPIEDAFNSLHKGNLLAAKDARIRQLEERLEGIREAGDALWYCVRHAQRVSAEELLEAIEEWREARNHG*
Ga0157138_100027321	F002038	N/A	MAETPKGIERIAATVPKQYALLLLLDGYPYVEMTARRHADFLTDLAAWKRKTQPSLARSVVRFFILSPAGDIKEMTFHK*
Ga0157138_100027327	F058813	N/A	MAPPTLVLIAGYARAGKDTLASGILEWSKRPSRKTNFADHLKDAANDYLWALNLEGNFHNEAFKVQHRDFLVSAGRLARSIDPDIFAKNLAYFAPIQHTPDEVAPETVVCSDWRYANELRVCQDVLWDLGWRVRTVYVATAGIGPANDEEFRSLCEIRETHSFDQEYVFAPNHRHAIIEEGRRLALSWHL*
Ga0157138_10002733	F001923	N/A	VSASPFNPEDIPKELKDGLVASILGGLAMTARLLLSTEPVSLGWVVRRVLAAAITAAIVGYAIQEHIQSPGLRMGVVGAAGYAAPECLDYLMRYVKARGEKEVAAVAGKPTKPNGKKAPTKPKRRK*
Ga0157138_10002734	F003583	N/A	MAKKPLPSPSAGSEVNLLLAVCLLTAFAGLSALASAWIAGFVLDQLQNTEAMALIIVDGVIKSDSQDLERNMSWATMALKSVRDLGWALSIGCLGVGVAAFLRSRRQNAS*
Ga0157138_10002735	F014261	N/A	MKALVTLSALLIFGWLALVTFFGPEVARAINAPEATKAKVHRRAR*
Ga0157138_10002738	F003714	N/A	MPSARHNLVEHLTFAGKNIPLKKPMAAYAANRLQAILPQIAALNQAGKSQADAAEALGTTVCTLRAWLDITSTPWRNIKRRGPYNIQAK*