Scaffold Ga0157138_1000112

Overview

Basic Information

• Taxon OID: 3300012352
• Scaffold ID: Ga0157138_1000112
• Source Dataset Name: Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21868
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (34.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Fraserville, Ontario
• Coordinates
  • Lat. (^o): 44.16961
  • Long. (^o): -78.4089

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074557	Metagenome / Metatranscriptome	119	Y
F097349	Metagenome / Metatranscriptome	104	Y
F101160	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_100011220	F074557	AGG	MTLVLALTAALLTSEAVSDPIVQAVEQVESSGRGAATPRGDGGKAIGPLQWHSVAWRDCSAVRRKAGLPVYPYSDAANPARAREYARTWLTVLKVRLASVIGRQPFPGEIWLAWNLGWSGFRRYGFQWAEVPAAKFEKARQVNTLAWGLRKPAASPN*
Ga0157138_100011224	F101160	N/A	MTTPYNSHSSVNALHDLIDKFVPAKEAALQEHYAKAEETRALLKRLGFWPTDKRKPVEVRGKKPKNGKLASELGREAYHWAYKNNATYTEAAERFRIDANSIHSYRQYRRLPKLRTK*
Ga0157138_100011232	F097349	N/A	MSKPKNIDNPVRLEACKELILNHRAKAGARASYELYGILFGLKVELDRIDHAPTSADFSPLIGKKRIASLFKAYDMVVEFRSAWKTDDQAKVVAWEADDNA*