Scaffold Ga0157138_1000049

Overview

Basic Information

• Taxon OID: 3300012352
• Scaffold ID: Ga0157138_1000049
• Source Dataset Name: Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33090
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (13.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Fraserville, Ontario
• Coordinates
  • Lat. (^o): 44.16961
  • Long. (^o): -78.4089

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016810	Metagenome	244	Y
F039487	Metagenome	163	Y
F042338	Metagenome	158	Y
F100353	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_100004910	F100353	N/A	MSFGYTQLYANGLNNNSQIRRSTDMIYQRGGSYEIVLTGDTYVSSMEMDVDLYSNEEKVGRMSLVPYDVTQSGATYTYKFNLRPYDYLQSFVESEHYQYYWLNDWYSTNESININNPYPNIIKTNFQYGYRYLTGSTVVTEYSGSPVNNFNHYTDIPTCATSTGFTASSFINTGQYFNYVGGQFQMDEKYYLPNFDQELGTVIGTGMTINTLDVNRRLSPMSQFMIDGPTVPEMSETARFLTDAPRIQTIQESENYVLYFLNGQTGDRQVMESDYAVFEFYDENNTQISYFDQQINISGTTYQSPTSNRNNLSVWSLPCGPKDIDNIFANIDWSQVAYYRVQLAYSFPTNSTNRVSLGPIGPSSEAFYFYVDTNCGPQNTRLAFLNARGGFDYFTFTSYRQDTKKISRQTYDNRYYATNLQSPDRNFGRTIKTFATDVDEEIVLESDFLNVQYGEWLQQLFMSPQVYEVREDYVSPLDRQDKVYKDLRPVQVVSTEVETITKKHKKLNKYKITLKRASTYFVNKGF*
Ga0157138_100004914	F042338	N/A	MVNYKQLIQDLSGIAYYHPQINSFGYGDITQITMDIESKQEPVYTKMYVVPGEVVLAQNRLDYNFSIIILDQINDDYSNQQDVMSDTLEIAKDVFTILYQSYTATFGDFSVDYEPLWGSNVLPFLERFETVLGGWTLNITIEQPFDYNNCVLPVSGLTLPQSTNLVNYKQIIKDFQEIARAHEQINSYGYGDITQLTMDIDTEQEPVYLKMYLVPGQTLFNQNELVYNFQVIITDQLNSDYSNQRDLMNDTLEVCKDVFTILYLSEYESEWNATCVPFLEEHETILGGWTMNLQITQPFDYNRCDLPERPFVTPNKKWYELAELWNTISTSWKNT*
Ga0157138_100004935	F016810	N/A	MTTEILLLISNALTGIAGFFVGKRRSDAETDNQVLRNLELSIGIYVKIIEDLKTEIHELNIKVQDLEKKVETLMDENRKLKKHNGL*
Ga0157138_100004938	F039487	N/A	NKGQQNELVLNINNNSRTDFSGYTLTFTHILSQEEKSYVIPTNDPQLFGENDRYCEIILNLQNDDLNYEGQYQLKIYGNGTNLVYTGMVRLNGTTEQGNEFITYVSPDEDNSNYIYIQQ*