Scaffold Ga0157138_1000045

Overview

Basic Information

• Taxon OID: 3300012352
• Scaffold ID: Ga0157138_1000045
• Source Dataset Name: Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33727
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (10.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Fraserville, Ontario
• Coordinates
  • Lat. (^o): 44.16961
  • Long. (^o): -78.4089

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009684	Metagenome	314	Y
F012345	Metagenome	281	Y
F067422	Metagenome	125	Y
F103264	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_100004514	F012345	N/A	MKYKLTYKIGLATVQEWIFTSKSLCYWKKMDLIETGRFNMGSFEIEQFDVLNWNKKTT*
Ga0157138_100004521	F067422	N/A	VKAMKKGYRCDETSDTIQVSTIDSIPYVLRDSIYWEKVIVQKDTIVRYKASFVPKTRFQTRIEYKYKTKYIKAEAQKVKYQNKYITKYKTRWLFVILAFVLGFFTRLALSETFRSRLKLLTKL*
Ga0157138_100004525	F009684	N/A	MTNIYKLTYSNKEQATADLKAKGILTEVEFNGEKHEAYGEGVQAVVEIGLIMITPPVMDGMVIVTPPVYADGYHYDVMSENTYEFGSNLVEPKNPKHAFAGHATTEEFPYEPNLLNISND
Ga0157138_10000457	F103264	N/A	MRNEKKMVALAAVLPVLADFIEDLNDQYVFKQDLKRKANILADEIRKVDYKVLQVYGEKRDEIYEQQVQLQLLFRQWIDETINLD*