Basic Information | |
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Taxon OID | 3300012352 Open in IMG/M |
Scaffold ID | Ga0157138_1000035 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36896 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (58.70%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Fraserville, Ontario | |||||||
Coordinates | Lat. (o) | 44.16961 | Long. (o) | -78.4089 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F001229 | Metagenome / Metatranscriptome | 741 | Y |
F003408 | Metagenome / Metatranscriptome | 488 | Y |
F030095 | Metagenome / Metatranscriptome | 186 | N |
F037095 | Metagenome / Metatranscriptome | 168 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157138_100003516 | F037095 | N/A | MIYMATKKFDKADLNKDGKVTMQEQILSALGTYGRAFLSAAMALYMTGNTDPKDLIAAGVAAVAPVILKALNPNDKSFGFTNK* |
Ga0157138_100003517 | F030095 | GGA | MAAQKNFEVDQNTTFTFEVQYLDEDSNPIQLNFHQAKMQVRDTQGGKKLAFTLTEDDGITISPTEGKLSISISADRTNKMFYPKSAYDLVLIDPSVNKTRLLEGYMTLSRSVTI* |
Ga0157138_100003540 | F001229 | N/A | MSSLITSMLPMKLDVYRQSDAQDENTGAIKKEWHFYKTVDCHAKGVISNSTTTRSGDNQIFSNKYTNEQMIQVRTIDKLTLREKVSNIRNSENIVIWTELDYPTDTPTVFELVGTTPITDPFGKVIGYNSTLKRSENQVIGF* |
Ga0157138_100003545 | F003408 | N/A | MPEMVQTFKAMQKTEGDKRKFLASLQGVDLNEDNEEVKTFDDIRRKALGINASADDVVSLQGSFASEAGFGVGAGLGYIEVHG* |
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